Publications | Stress and Adaptation Biology

Kikuchi T, Soga K, Kotake T, Takahashi D 2025

Defective pollen meiosis in Arabidopsis due to combined arabinan and galactan insufficiency.

Plant & Cell Physiology

66: 1346-1359.

Charrier G, Willick IR, Takahashi D 2023

Cross-disciplinary insights into the mechanisms of plant cold hardiness: From molecules to ecosystems.

Physiologia Plantarum

175: e13901

Md Mostafa K, Takahashi D , Nakayama T, Miki Y, Kawamura Y, Uemura M 2020.

Proteomic approaches to identify cold regulated plasma membrane proteins.

In: Plant Cold Acclimation: Methods in Molecular Biology , Eds. Hincha DK, Zuther E (Humana, New York, NY), 171-186 (ISBN-978-1-0716-0659-9).

Takahashi D , Zuther E, Hincha DK 2020.

Analysis of changes in plant cell wall composition and structure during cold acclimation.

In: Plant Cold Acclimation: Methods in Molecular Biology , Eds. Hincha DK, Zuther E (Humana, New York, NY), 255-268 (ISBN-978-1-0716-0659-9).

Takahashi D , Li B, Nakayama T, Kawamura Y, Uemura M 2020.

Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS.

In: Plant Proteomics: Methods in Molecular Biology , Eds. Jorrin-Novo J, Valledor L, Castillejo M, Rey MD (Humana, New York, NY), 89-106 (ISBN-978-1-0716-0527-1).

Takahashi D , Uemura M, Kawamura Y 2018.

Freezing tolerance of plant cells: from the aspect of plasma membrane and microdomain.

In: Survival Strategies in Extreme Cold and Desiccation: Advances in Experimental Medicine and Biology , Eds. Uemura M, Inoue M, Sakurai M (Springer, Singapore), 61-79 (ISBN- 978-981-13-1244-1).

Li B, Takahashi D , Kawamura Y, Uemura M 2018.

Plasma membrane proteomics of Arabidopsis suspension-cultured cells associated with growth phase using nano-LC-MS/MS.

In: Plant Membrane Proteomics: Methods in Molecular Biology , Eds. Mock HP, Matros A, Witzel K (Humana, New York, NY), 185-194 (ISBN-13:978-1-4939-7409-2).

Minami A, Takahashi D , Kawamura Y, Uemura M 2017.

Isolation of plasma membrane and plasma membrane microdomains.

In: Isolation of Plant Organelles and Structures: Methods in Molecular Biology , Eds. Taylor N, Millar H (Humana, New York, NY), 199-212 (ISBN-13: 978-1-4939-6531-1).

Takahashi D , Nakayama T, Miki Y, Kawamura Y, Uemura M 2014.

Proteomic approaches to identify cold regulated plasma membrane proteins.

In: Plant Cold Acclimation: Methods in Molecular Biology , Eds. Hincha DK, Zuther E (Humana, New York, NY), 159-170 (ISBN-13: 978-1-4939-0843-1).

Takahashi D , Li B, Nakayama T, Kawamura Y, Uemura M 2014.

Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS.

In: Plant Proteomics: Methods in Molecular Biology , 2nd Ed. Eds. Jorrin-Novo J., Komatsu S, Weckwerth W, Wienkoop S (Humana Press, Totowa, NJ), 481-498 (ISBN-13: 978-1-62703-630-6)

Shikata H*, Yoshinari A*, Asaoka M*, Takahashi D* 2025

Memory in the wall: expanding our understanding of the roles of plant cell walls.

New Phytologists 249: 56-72 (*corresponding authors, equally contributed).

Kotake T, Takahashi D 2024

On the separate metabolisms of UDP-sugars and GDP-sugars in plants.

Trends in Glycoscience and Glycotechnology 36: 6-11.

Ghosh K, Takahashi D , Kotake T 2023

Plant type II arabinogalactan: Structural features and modification to increase functionality.

Carbohydrate Research 529: 108828.

Charrier G*, Willick IR*, Takahashi D * 2023

Cross-disciplinary insights into the mechanisms of plant cold hardiness: From molecules to ecosystems.

Physiologia Plantarum 175: e13901 (*corresponding authors, equally contributed).

Special issue cover page

Takahashi D *, Willick IR*, Kasuga J, Livingston III DP 2021.

Responses of the plant cell wall to sub-zero temperatures: a brief update.

Plant and Cell Physiology 62: 1858-1866 (*corresponding authors, equally contributed).

Takahashi D , Li B, Nakayama T, Kawamura Y, Uemura M 2013.

Plant plasma membrane proteomics for improving cold tolerance.

Frontiers in Plant Science 4:90.

Takahashi D , Kawamura Y, Uemura M 2013.

Detergent-resistant plasma membrane proteome to elucidate microdomain functions in plant cells.

Frontiers in Plant Science 4:27.

Kikuchi A, Sato E, Yoshimi Y, Takasaki H, Nishigaki N, Atsuzawa K, Kaneko Y, Yamaguchi M, Takahashi D, Dupree P, Kotake T 2026

Atypical endo-β-1,4-mannanases are necessary for normal glucomannan synthesis in Arabidopsis.

Plant Physiology 201: kiag174.

Yamaguchi M, Sato A, Takahashi D, Mori K, Fujimoto R, Miyagi A, Sato E, Ishikawa T, Sano R, Kurata T, Suzuki S, Kaneko Y, Kawai-Yamada M, Kotake T 2025

The rice BRITTLE CULM 4 gene encodes a membrane protein affecting cellulose synthesis in the secondary cell wall.

Plant & Cell Physiology 66: 1444-1453.

Kikuchi T, Soga K, Kotake T, Takahashi D 2025

Defective Pollen Meiosis in Arabidopsis Due to Combined Arabinan and Galactan Insufficiency.

Plant & Cell Physiology 66: 1346-1359.

Cover image

Rani TS, Takahashi D, Mukherjee S, Uemura M, Madhuprakash J, Podile AR 2025

Secretome analysis of the chitinolytic machinery of Chitiniphilus shinanonensis and its implication in chitooligosaccharide production.

Carbohydrate Polymers 353: 123272.

Chowhan S, Kikuchi T, Ohashi M, Kutsuno T, Handa H, Kotake T, Takahashi D 2024

Soluble sugars make a greater contribution variability than cell wall components to the of freezing tolerance in wheat cultivars.

Plant Biotechnology 41: 401-415.

Umezawa A, Matsumoto M, Handa H, Nakazawa K, Miyagawa M, Seifert GJ, Takahashi D , Fushinobu S, Kotake T 2024

Cytosolic UDP‐L‐arabinose synthesis by bifunctional UDP‐glucose 4‐epimerases in Arabidopsis.

Plant Journal 119: 508-524.

Takahashi D , Soga K, Kikuchi T, Kutsuno T, Hao P, Sasaki K, Nishiyama Y, Kidokoro S, Sampathkumar A, Bacic A, Johnson KL, Kotake T 2024.

Structural changes in cell wall pectic polymers contribute to freezing tolerance induced by cold acclimation in plants. Current Biology 34: 958-968.

Saitama University Press Release , JST Science Japan , JST Objective Japan , Science Newspaper , Science Portal

Takahashi H, Kono T, Sawada K, Kumano S, Tsuri Y, Maruyama M, Yoshimura M, Takahashi D , Kawamura Y, Uemura M, Nakabayashi S, Mori Y, Hosokawa Y, Yoshikawa H 2023.

Spatiotemporal control of ice crystallization in supercooled water via an ultrashort laser impulse.

Journal of Physical Chemistry Letters 14: 4394-4402.

Lonsdale A, Ceballos-Laita L, Takahashi D , Uemura M, Abadía J, Davis M, Bacic A, Doblin MS 2023.

LSPpred suite: tools for leaderless secretory protein prediction in plants.

Plants 12: 1428.

Kutsuno T, Chowhan S, Kotake T, Takahashi D 2023.

Temporal cell wall changes during cold acclimation and deacclimation and their potential involvement in freezing tolerance and growth.

Physiologia Plantarum 175: e13837.

Special issue cover page

Oikawa K, Goto-Yamada S, Hayashi Y, Takahashi D , Kimori Y, Shibata M, Yoshimoto K, Takemiya A, Kondo M, Hikino K, Kato A, Shimoda K, Ueda H, Uemura M, Numata K, Ohsumi Y, Hara-Nishimura I, Mano S, Yamada K, Nishimura M 2022.

Pexophagy suppresses ROS-induced damage in leaf cells under high-intensity light.

Nature Communications 13: 7493.

National Institute for Basic Biology Press Release

Watanabe E, Kondo M, Md Mostafa K, Uemura M, Takahashi D *, Kawamura Y* 2022.

Plasma membrane proteomic changes of Arabidopsis DRP1E during cold acclimation in association with the enhancement of freezing tolerance.

Physiologia Plantarum 173: e13820 (*corresponding authors, equally contributed).

Special issue cover page

Kikuchi A, Hara K, Yoshimi Y, Soga K, Takahashi D and Kotake T 2022.

In vivo structural modification of type II arabinogalactans with fungal endo-β-1,6-galactanase in Arabidopsis.

Frontiers in Plant Science 13:1010492.

Ceballos-Laita L, Takahashi D , Uemura M, Abadía J, López-Millán AF, Rodríguez-Celma J 2022.

Effects of Fe and Mn deficiencies on the root protein profiles of tomato ( Solanum lycopersicum ) using two-dimensional electrophoresis and label-free shotgun analyses.

International Journal of Molecular Sciences 23:3719.

Nishigaki N, Yoshimi Y, Kuki H, Kunieda T, Hara-Nishimura I, Tsumuraya Y, Takahashi D , Dupree P, Kotake T 2021.

Galactoglucomannan structure of Arabidopsis seed-coat mucilage in GDP mannose synthesis impaired mutants.

Physiologia Plantarum 173:1244-1252.

Takahashi D *, Johnson K, Hao P, Tuong T, Erban A, Sampathkumar A, Bacic A, Livingston III DP, Kopka J, Kuroha T, Yokoyama R, Nishitani K, Zuther E*, Hincha DK 2021.

Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation.

Plant, Cell & Environment 44: 915-930 (*corresponding authors).

Ito K, Fukuoka K, Nishigaki N, Hara K, Yoshimi Y, Kuki H, Takahashi D , Tsumuraya Y, Kotake T 2020.

Structural features conserved in subclass of type II arabinogalactan.

Plant Biotechnology 37:459-463.

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D , Lonsdale A, Abadía A, Doblin MS, Bacic A, Uemura M, Abadía J, López-Millán AF 2020.

Effects of excess manganese on the xylem sap protein profile of tomato ( Solanum lycopersicum ) as revealed by shotgun proteomic analysis.

International Journal of Molecular Sciences 22:8863.

Li B, Takahashi D , Kawamura Y, Uemura M 2020.

Plasma membrane proteome analyzes of Arabidopsis thaliana suspension-cultured cells during cold acclimation or ABA treatment: relationship with freezing tolerance and growth phase.

Journal of Proteomics 211: 103528.

Takahashi D , Gorka M, Erban A, Graf A, Kopka J, Zuther E, Hincha DK 2019.