Rani TS, Takahashi D, Mukherjee S, Uemura M, Madhuprakash J, Podile AR 2025

Secretome analysis of the chitinolytic machinery of Chitiniphilus shinanonensis and its implication in chitooligosaccharide production.

Carbohydrate Polymers 353: 123272.

Chowhan S, Kikuchi T, Ohashi M, Kutsuno T, Handa H, Kotake T, Takahashi D 2024

Soluble sugars make a greater contribution variability than cell wall components to the of freezing tolerance in wheat cultivars.

Plant Biotechnology 41: 401-415.

Umezawa A, Matsumoto M, Handa H, Nakazawa K, Miyagawa M, Seifert GJ, Takahashi D , Fushinobu S, Kotake T 2024

Cytosolic UDP‐L‐arabinose synthesis by bifunctional UDP‐glucose 4‐epimerases in Arabidopsis.  

Plant Journal 119: 508-524.

Takahashi D , Soga K, Kikuchi T, Kutsuno T, Hao P, Sasaki K, Nishiyama Y, Kidokoro S, Sampathkumar A, Bacic A, Johnson KL, Kotake T 2024.

Structural changes in cell wall pectic polymers contribute to freezing tolerance induced by cold acclimation in plants.  

Current Biology 34: 958-968.

Saitama University Press Release , JST Science Japan , JST Objective Japan , Science Newspaper , Science Portal

Takahashi H, Kono T, Sawada K, Kumano S, Tsuri Y, Maruyama M, Yoshimura M, Takahashi D , Kawamura Y, Uemura M, Nakabayashi S, Mori Y, Hosokawa Y, Yoshikawa H 2023.

Spatiotemporal control of ice crystallization in supercooled water via an ultrashort laser impulse.  

Journal of Physical Chemistry Letters 14: 4394-4402.

Lonsdale A, Ceballos-Laita L, Takahashi D , Uemura M, Abadía J, Davis M, Bacic A, Doblin MS 2023.

LSPpred suite: tools for leaderless secretory protein prediction in plants.  

Plants 12: 1428.

Kutsuno T, Chowhan S, Kotake T, Takahashi D 2023.

Temporal cell wall changes during cold acclimation and deacclimation and their potential involvement in freezing tolerance and growth.  

Physiologia Plantarum 175: e13837.

Special issue cover page

Oikawa K, Goto-Yamada S, Hayashi Y, Takahashi D , Kimori Y, Shibata M, Yoshimoto K, Takemiya A, Kondo M, Hikino K, Kato A, Shimoda K, Ueda H, Uemura M, Numata K, Ohsumi Y, Hara-Nishimura I, Mano S, Yamada K, Nishimura M 2022.

Pexophagy suppresses ROS-induced damage in leaf cells under high-intensity light.  

Nature Communications 13: 7493.

National Institute for Basic Biology Press Release

Watanabe E, Kondo M, Md Mostafa K, Uemura M, Takahashi D *, Kawamura Y* 2022.

Plasma membrane proteomic changes of Arabidopsis DRP1E during cold acclimation in association with the enhancement of freezing tolerance.  

Physiologia Plantarum 173: e13820 (*corresponding authors, equally contributed).

Special issue cover page

Kikuchi A, Hara K, Yoshimi Y, Soga K, Takahashi D and Kotake T 2022.

In vivo structural modification of type II arabinogalactans with fungal endo-β-1,6-galactanase in Arabidopsis.  

Frontiers in Plant Science 13:1010492.

Ceballos-Laita L, Takahashi D , Uemura M, Abadía J, López-Millán AF, Rodríguez-Celma J 2022.

Effects of Fe and Mn deficiencies on the root protein profiles of tomato ( Solanum lycopersicum ) using two-dimensional electrophoresis and label-free shotgun analyses.  

International Journal of Molecular Sciences 23:3719.

Nishigaki N, Yoshimi Y, Kuki H, Kunieda T, Hara-Nishimura I, Tsumuraya Y, Takahashi D , Dupree P, Kotake T 2021.

Galactoglucomannan structure of Arabidopsis seed-coat mucilage in GDP mannose synthesis impaired mutants.  

Physiologia Plantarum 173:1244-1252.

Takahashi D *, Johnson K, Hao P, Tuong T, Erban A, Sampathkumar A, Bacic A, Livingston III DP, Kopka J, Kuroha T, Yokoyama R, Nishitani K, Zuther E*, Hincha DK 2021.

Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation.  

Plant, Cell & Environment 44: 915-930 (*corresponding authors).

Ito K, Fukuoka K, Nishigaki N, Hara K, Yoshimi Y, Kuki H, Takahashi D , Tsumuraya Y, Kotake T 2020.

Structural features conserved in subclass of type II arabinogalactan.  

Plant Biotechnology 37:459-463.

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D , Lonsdale A, Abadía A, Doblin MS, Bacic A, Uemura M, Abadía J, López-Millán AF 2020.

Effects of excess manganese on the xylem sap protein profile of tomato ( Solanum lycopersicum ) as revealed by shotgun proteomic analysis.  

International Journal of Molecular Sciences 22:8863.

Li B, Takahashi D , Kawamura Y, Uemura M 2020.

Plasma membrane proteome analyzes of Arabidopsis thaliana suspension-cultured cells during cold acclimation or ABA treatment: relationship with freezing tolerance and growth phase.  

Journal of Proteomics 211: 103528.

Takahashi D , Gorka M, Erban A, Graf A, Kopka J, Zuther E, Hincha DK 2019.

Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana .  

Scientific Reports 9:2289.

Miki Y*, Takahashi D *, Kawamura Y, Uemura M 2018.

Temporal proteomics of Arabidopsis plasma membrane during cold- and de-acclimation.  

Journal of Proteomics 197:71-81 (*co-first author).

Willick IR, Takahashi D , Fowler DB, Uemura M, Tanino KK 2018.

Tissue-specific changes in apoplastic proteins and cell wall structure during cold acclimation of winter wheat crowns.  

Journal of Experimental Botany 69: 1221-1234.

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D , Abadía A, Uemura M, Abadía J, López-Millán AF 2017.

Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics.  

Data in Brief 17: 512-516.

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D , Abadía A, Uemura M, Abadía J, López-Millán AF 2017.

Effects of Fe and Mn deficiencies on the protein profiles of tomato ( Solanum lycopersicum ) xylem sap as revealed by shotgun analysis.  

Journal of Proteomics 170: 117-129.

Takahashi D , Kawamura Y, Uemura M 2016.

Cold acclimation is accompanied by complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in Arabidopsis .  

Journal of Experimental Botany 67: 5203-5215.

Gutierrez-Carbonell E, Takahashi D , Lüthje S, González-Reyes JA, Contreras-Moreira B, Abadía A, Uemura M, Abadía J, López-Millán, AF 2016.

A shotgun proteomic approach reveals that Fe deficiency causes marked changes in the protein profiles of plasma membrane and detergent resistant microdomain preparations from Beta vulgaris roots.  

Journal of Proteome Research h 15: 2510-2524.

Takahashi D , Imai H, Kawamura Y, Uemura M 2016.

Lipid profiles of detergent resistant fractions of the plasma membrane in oat and rye in association with cold acclimation and freezing tolerance.  

Cryobiology 72:123-134.

Rani TS, Takahashi D , Uemura M, Podile AR 2015.

Proteins associated with oxidative burst and cell wall strengthening accumulate during citrus- Xanthomonas non-host interaction.  

Plant Molecular Biology Reporter 33:1349-1360.

Gutierrez-Carbonell E, Takahashi D , Lattanzio G, Rodríguez-Celma J, Kehr J, Soll J, Philippar K, Uemura M, Abadía J, López-Millán AF 2014.

The distinct functional roles of the inner and outer chloroplast envelope of pea ( Pisum sativum ) as revealed by proteomic approaches.  

Journal of Proteome Research 13:2941-2953.

Takahashi D , Kawamura Y, Uemura M 2013.

Changes of detergent-resistant plasma membrane proteins in oat and rye during cold acclimation: association with differential freezing tolerance.  

Journal of Proteome Research 12:4998-5011.

Li B, Takahashi D , Kawamura Y, Uemura M 2012.

Comparison of plasma membrane proteomic changes of Arabidopsis suspension cells (T87 line) after cold and abscisic acid treatment in association with freezing tolerance development.  

Plant and Cell Physiology 53:543-554.

Takahashi D , Kawamura Y, Yamashita T, Uemura M 2012.

Detergent-resistant plasma membrane proteome in oat and rye: similarities and dissimilarities between two monocotyledonous plants.  

Journal of Proteome Research 11:1654-1665.