Works

Yamaguchi M, Sato A, Takahashi D, Mori K, Fujimoto R, Miyagi A, Sato E, Ishikawa T, Sano R, Kurata T, Suzuki S, Kaneko Y, Kawai-Yamada M, Kotake T

Plant and Cell Physiology 66: 1444–1453

DOI: 10.1093/pcp/pcaf096

2024

Research article

Soluble sugars make a greater contribution than cell wall components to the variability of freezing tolerance in wheat cultivars

Chowhan S, Kikuchi T, Ohashi M, Kutsuno T, Handa H, Kotake T, Takahashi D

Plant Biotechnology 41: 401–415

DOI: 10.5511/plantbiotechnology.24.0801a

Research article

Structural changes in cell wall pectic polymers contribute to freezing tolerance induced by cold acclimation in plants

Takahashi D, Soga K, Kikuchi T, Kutsuno T, Hao P, Sasaki K, Nishiyama Y, Kidokoro S, Sampathkumar A, Bacic A, Johnson KL, Kotake T

Current Biology 34: 958–968.e5

DOI: 10.1016/j.cub.2024.01.045 Saitama University release (Japanese) JST Science Japan JST Science Portal China Science News (Japanese) Science Portal (Japanese)

Research article

Cytosolic UDP-L-arabinose synthesis by bifunctional UDP-glucose 4-epimerases in Arabidopsis

Umezawa A, Matsumoto M, Handa H, Nakazawa K, Miyagawa M, Seifert GJ, Takahashi D, Fushinobu S, Kotake T

The Plant Journal 119: 508–524

DOI: 10.1111/tpj.16779

Review

On the separate metabolisms of UDP-sugars and GDP-sugars in plants

Kotake T, Takahashi D

Trends in Glycoscience and Glycotechnology 36: E6–E11

DOI: 10.4052/tigg.2303.1e

2023

Research articleFirst online: 2022

Temporal cell wall changes during cold acclimation and deacclimation and their potential involvement in freezing tolerance and growth

Kutsuno T, Chowhan S, Kotake T, Takahashi D

Physiologia Plantarum 175: e13837

DOI: 10.1111/ppl.13837

Physiologia Plantarum — Cover of the special issue — Cover of the special issue
Photo · Daisuke Takahashi

Research article

LSPpred suite: tools for leaderless secretory protein prediction in plants

Lonsdale A, Ceballos-Laita L, Takahashi D, Uemura M, Abadía J, Davis M, Bacic A, Doblin MS

Plants 12: 1428

DOI: 10.3390/plants12071428

Research article

Spatiotemporal control of ice crystallization in supercooled water via an ultrashort laser impulse

Takahashi H, Kono T, Sawada K, Kumano S, Tsuri Y, Maruyama M, Yoshimura M, Takahashi D, Kawamura Y, Uemura M, Nakabayashi S, Mori Y, Hosokawa Y, Yoshikawa H

The Journal of Physical Chemistry Letters 14: 4394–4402

DOI: 10.1021/acs.jpclett.3c00414

Review

Cross-disciplinary insights into the mechanisms of plant cold hardiness: from molecules to ecosystems

Charrier G*, Willick IR*, Takahashi D*

Physiologia Plantarum 175: e13901

*Co-corresponding authors; equal contribution

DOI: 10.1111/ppl.13901 Special issue

Review

Plant type II arabinogalactan: structural features and modification to increase functionality

Ghosh K, Takahashi D, Kotake T

Carbohydrate Research 529: 108828

DOI: 10.1016/j.carres.2023.108828

2022

Research article

Effects of Fe and Mn deficiencies on the root protein profiles of tomato (Solanum lycopersicum) using two-dimensional electrophoresis and label-free shotgun analyses

Ceballos-Laita L, Takahashi D, Uemura M, Abadía J, López-Millán AF, Rodríguez-Celma J

International Journal of Molecular Sciences 23: 3719

DOI: 10.3390/ijms23073719

Research article

In vivo structural modification of type II arabinogalactans with fungal endo-β-1,6-galactanase in Arabidopsis

Kikuchi A, Hara K, Yoshimi Y, Soga K, Takahashi D, Kotake T

Frontiers in Plant Science 13: 1010492

DOI: 10.3389/fpls.2022.1010492

Research article

Pexophagy suppresses ROS-induced damage in leaf cells under high-intensity light

Oikawa K, Goto-Yamada S, Hayashi Y, Takahashi D, Kimori Y, Shibata M, Yoshimoto K, Takemiya A, Kondo M, Hikino K, Kato A, Shimoda K, Ueda H, Uemura M, Numata K, Ohsumi Y, Hara-Nishimura I, Mano S, Yamada K, Nishimura M

Nature Communications 13: 7493

DOI: 10.1038/s41467-022-35138-z NIBB release (Japanese)

Research article

Plasma membrane proteomic changes of Arabidopsis DRP1E during cold acclimation in association with the enhancement of freezing tolerance

Watanabe E, Kondo M, Md Mostafa K, Uemura M, Takahashi D*, Kawamura Y*

Physiologia Plantarum 174: e13820

*Co-corresponding authors; equal contribution

DOI: 10.1111/ppl.13820 Special issue

2021

Research article

Galactoglucomannan structure of Arabidopsis seed-coat mucilage in GDP-mannose synthesis impaired mutants

Nishigaki N, Yoshimi Y, Kuki H, Kunieda T, Hara-Nishimura I, Tsumuraya Y, Takahashi D, Dupree P, Kotake T

Physiologia Plantarum 173: 1244–1252

DOI: 10.1111/ppl.13519

Research articleFirst online: 2020

Cell wall modification by the xyloglucan endotransglucosylase/hydrolase XTH19 influences freezing tolerance after cold and sub-zero acclimation

Takahashi D*, Johnson K, Hao P, Tuong T, Erban A, Sampathkumar A, Bacic A, Livingston III DP, Kopka J, Kuroha T, Yokoyama R, Nishitani K, Zuther E*, Hincha DK

Plant, Cell & Environment 44: 915–930

*Co-corresponding authors

DOI: 10.1111/pce.13953

Review

Responses of the plant cell wall to sub-zero temperatures: a brief update

Takahashi D*, Willick IR*, Kasuga J, Livingston III DP

Plant and Cell Physiology 62: 1858–1866

*Co-corresponding authors; equal contribution

DOI: 10.1093/pcp/pcab103

2020

Research article

Effects of excess manganese on the xylem sap protein profile of tomato (Solanum lycopersicum) as revealed by shotgun proteomic analysis

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D, Lonsdale A, Abadía A, Doblin MS, Bacic A, Uemura M, Abadía J, López-Millán AF

International Journal of Molecular Sciences 21: 8863

DOI: 10.3390/ijms21228863

Research article

Structural features conserved in subclass of type II arabinogalactan

Ito K, Fukuoka K, Nishigaki N, Hara K, Yoshimi Y, Kuki H, Takahashi D, Tsumuraya Y, Kotake T

Plant Biotechnology 37: 459–463

DOI: 10.5511/plantbiotechnology.20.0721a

Research article

Plasma membrane proteome analyses of Arabidopsis thaliana suspension-cultured cells during cold or ABA treatment: relationship with freezing tolerance and growth phase

Li B, Takahashi D, Kawamura Y, Uemura M

Journal of Proteomics 211: 103528

DOI: 10.1016/j.jprot.2019.103528

Book chapter

Proteomic approaches to identify cold-regulated plasma membrane proteins

Md Mostafa K, Takahashi D, Nakayama T, Miki Y, Kawamura Y, Uemura M

In: Plant Cold Acclimation: Methods in Molecular Biology. Hincha DK, Zuther E (eds.). Humana, New York, NY, pp. 171–186. ISBN 978-1-0716-0659-9.

DOI: 10.1007/978-1-0716-0660-5_13

Book chapter

Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS

Takahashi D, Li B, Nakayama T, Kawamura Y, Uemura M

In: Plant Proteomics: Methods in Molecular Biology. Jorrin-Novo J, Valledor L, Castillejo M, Rey MD (eds.). Humana, New York, NY, pp. 89–106. ISBN 978-1-0716-0527-1.

DOI: 10.1007/978-1-0716-0528-8_7

Book chapter

Analysis of changes in plant cell wall composition and structure during cold acclimation

Takahashi D, Zuther E, Hincha DK

In: Plant Cold Acclimation: Methods in Molecular Biology. Hincha DK, Zuther E (eds.). Humana, New York, NY, pp. 255–268. ISBN 978-1-0716-0659-9.

DOI: 10.1007/978-1-0716-0660-5_17

2019

Research article

Temporal proteomics of Arabidopsis plasma membrane during cold- and de-acclimation

Miki Y*, Takahashi D*, Kawamura Y, Uemura M

Journal of Proteomics 197: 71–81

*Co-first authors

DOI: 10.1016/j.jprot.2018.11.008

Research article

Both cold and sub-zero acclimation induce cell wall modification and changes in the extracellular proteome in Arabidopsis thaliana

Takahashi D, Gorka M, Erban A, Graf A, Kopka J, Zuther E, Hincha DK

Scientific Reports 9: 2289

DOI: 10.1038/s41598-019-38688-3

2018

Research article

Data on xylem sap proteins from Mn- and Fe-deficient tomato plants obtained using shotgun proteomics

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D, Abadía A, Uemura M, Abadía J, López-Millán AF

Data in Brief 17: 512–516

DOI: 10.1016/j.dib.2018.01.034

Research article

Effects of Fe and Mn deficiencies on the protein profiles of tomato (Solanum lycopersicum) xylem sap as revealed by shotgun analyses

Ceballos-Laita L, Gutierrez-Carbonell E, Takahashi D, Abadía A, Uemura M, Abadía J, López-Millán AF

Journal of Proteomics 170: 117–129

DOI: 10.1016/j.jprot.2017.08.018

Research article

Tissue-specific changes in apoplastic proteins and cell wall structure during cold acclimation of winter wheat crowns

Willick IR, Takahashi D, Fowler DB, Uemura M, Tanino KK

Journal of Experimental Botany 69: 1221–1234

DOI: 10.1093/jxb/erx450

Book chapterFirst online: 2017

Plasma membrane proteomics of Arabidopsis suspension-cultured cells associated with growth phase using nano-LC-MS/MS

Li B, Takahashi D, Kawamura Y, Uemura M

In: Plant Membrane Proteomics: Methods in Molecular Biology. Mock H-P, Matros A, Witzel K (eds.). Humana, New York, NY, pp. 185–194. ISBN 978-1-4939-7409-2.

DOI: 10.1007/978-1-4939-7411-5_12

Book chapter

Freezing tolerance of plant cells: from the aspect of plasma membrane and microdomain

Takahashi D, Uemura M, Kawamura Y

In: Survival Strategies in Extreme Cold and Desiccation: Advances in Experimental Medicine and Biology. Uemura M, Inoue M, Sakurai M (eds.). Springer, Singapore, pp. 61–79. ISBN 978-981-13-1244-1.

DOI: 10.1007/978-981-13-1244-1_4

2017

Book chapterFirst online: 2016

Isolation of plasma membrane and plasma membrane microdomains

Minami A, Takahashi D, Kawamura Y, Uemura M

In: Isolation of Plant Organelles and Structures: Methods in Molecular Biology. Taylor N, Millar H (eds.). Humana, New York, NY, pp. 199–212. ISBN 978-1-4939-6531-1.

DOI: 10.1007/978-1-4939-6533-5_16

2016

Research article

A shotgun proteomic approach reveals that Fe deficiency causes marked changes in the protein profiles of plasma membrane and detergent-resistant microdomain preparations from Beta vulgaris roots

Gutierrez-Carbonell E, Takahashi D, Lüthje S, González-Reyes JA, Contreras-Moreira B, Abadía A, Uemura M, Abadía J, López-Millán A-F

Journal of Proteome Research 15: 2510–2524

DOI: 10.1021/acs.jproteome.6b00026

Research article

Lipid profiles of detergent resistant fractions of the plasma membrane in oat and rye in association with cold acclimation and freezing tolerance

Takahashi D, Imai H, Kawamura Y, Uemura M

Cryobiology 72: 123–134

DOI: 10.1016/j.cryobiol.2016.02.003

Research article

Cold acclimation is accompanied by complex responses of glycosylphosphatidylinositol (GPI)-anchored proteins in Arabidopsis

Takahashi D, Kawamura Y, Uemura M

Journal of Experimental Botany 67: 5203–5215

DOI: 10.1093/jxb/erw279

2015

Research articleFirst online: 2014

Proteins associated with oxidative burst and cell wall strengthening accumulate during Citrus-Xanthomonas non-host interaction

Rani TS, Takahashi D, Uemura M, Podile AR

Plant Molecular Biology Reporter 33: 1349–1360

DOI: 10.1007/s11105-014-0817-y

2014

Research article

The distinct functional roles of the inner and outer chloroplast envelope of pea (Pisum sativum) as revealed by proteomic approaches

Gutierrez-Carbonell E, Takahashi D, Lattanzio G, Rodríguez-Celma J, Kehr J, Soll J, Philippar K, Uemura M, Abadía J, López-Millán A-F

Journal of Proteome Research 13: 2941–2953

DOI: 10.1021/pr500106s

Book chapterFirst online: 2013

Shotgun proteomics of plant plasma membrane and microdomain proteins using nano-LC-MS/MS

Takahashi D, Li B, Nakayama T, Kawamura Y, Uemura M

In: Plant Proteomics: Methods in Molecular Biology (2nd ed.). Jorrin-Novo J, Komatsu S, Weckwerth W, Wienkoop S (eds.). Humana Press, Totowa, NJ, pp. 481–498. ISBN 978-1-62703-630-6.

DOI: 10.1007/978-1-62703-631-3_33

Book chapter

Proteomic approaches to identify cold-regulated plasma membrane proteins

Takahashi D, Nakayama T, Miki Y, Kawamura Y, Uemura M

In: Plant Cold Acclimation: Methods in Molecular Biology. Hincha DK, Zuther E (eds.). Humana, New York, NY, pp. 159–170. ISBN 978-1-4939-0843-1.

DOI: 10.1007/978-1-4939-0844-8_13

2013

Research article

Changes of detergent-resistant plasma membrane proteins in oat and rye during cold acclimation: association with differential freezing tolerance

Takahashi D, Kawamura Y, Uemura M

Journal of Proteome Research 12: 4998–5011

DOI: 10.1021/pr400750g

Review

Detergent-resistant plasma membrane proteome to elucidate microdomain functions in plant cells

Takahashi D, Kawamura Y, Uemura M

Frontiers in Plant Science 4: 27

DOI: 10.3389/fpls.2013.00027

Review

Plant plasma membrane proteomics for improving cold tolerance

Takahashi D, Li B, Nakayama T, Kawamura Y, Uemura M

Frontiers in Plant Science 4: 90

DOI: 10.3389/fpls.2013.00090

2012

Research article

Comparison of plasma membrane proteomic changes of Arabidopsis suspension-cultured cells (T87 line) after cold and ABA treatment in association with freezing tolerance development

Li B, Takahashi D, Kawamura Y, Uemura M

Plant and Cell Physiology 53: 543–554

DOI: 10.1093/pcp/pcs010

Research article

Detergent-resistant plasma membrane proteome in oat and rye: similarities and dissimilarities between two monocotyledonous plants

Takahashi D, Kawamura Y, Yamashita T, Uemura M

Journal of Proteome Research 11: 1654–1665

DOI: 10.1021/pr200849v

Publications are listed by volume year. An earlier online publication year is noted where applicable. Author-contribution notes are given with each record.